Sorry @Lubos but it is not fixed because you now simply do not allow more than 1,000 records to show. It was already reported that anything beyond 1,000 is greyed out, see bug Inability to display or copy all records in some tabs - #13 by GrahamvdR. So we are stuck with batch updates not working for amounts that pass that threshold. Even worse we can therefore in our businesses only see receipts and payments for the last few months and can not access any earlier ones.
A fix would have been that it worked as before and allowing all the records one selects to be subject to batch operations. As it stands it is unexpected behaviour as it worked before on all selected records.