Server Edition on godaddy windows hosting

i am trying to make my own cloud edition of Manager.io using godaddy windows hosting and Server Edition, is it possible to do that on godaddy?

You must use only VPS or VDS server. WEB server not compatible. You can’t install Manager to WEB server if you mean godaddy.com. Ask them for VPS server

and after i get VPS server do i just drop the files in FTP or do i have to do something else ?

My company try now on Ubuntu VPS server. Not have experience on Window servers. For upload your data you can use FTP or console

i mean do you have any idea about the setup process ?

First you must ask your VPS provider. It must be your first step

i mean the general setup process and if there are any common problems that might happen

You should know configuration of your server. Also you must ask according your server control and data upload ways. Some solutions are similar as for installation on desktop. Very important to make you program startup because if it non configured, you can not connect to your Manager after power shut down or restart. Also you must read guide: Installation | Manager

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