Deduction invoce

I work in the contracting sector with government agencies under a contract
When submitting the invoice, the deduction of a accounts from the total invoice must be taken into account in a fixed rate or amount, and

from it, including expenses and other assets.
How can this be caught by the manager?

What are these deductions for? Are they amounts the customer does not have to pay to you, but must pay to some authority? Or are you referring to deductions for payments already made by the customer to you? If the first, see https://www.manager.io/guides/12346.

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i referring to deductions for payments already made by the customer to me

In this case, the credits applied to the invoice, whether from advances or receipts, appear automatically in the mini-statement at the bottom of the invoice. All you have to do is make sure the transactions are posted to Accounts receivable > Customer > Invoice#.