You should not use payroll, as the owner is not an employee. Depending on how you organize your chart of accounts, you either make a draw from your capital account or directly from Retained earnings. See these Guides:
For a corporation, the owner is an employee so the payroll would be like for any other employee.
For a sole trader, any money withdrawn would be posted to the Drawings account in the BS Equity section. Any payment of taxes based on a tax return assessment would also be posted there.
Without further details on your particular situation one can’t comment further.